Release v2.7.0

[cmdcolin]

This release contains a number of new features and improvements

• adds the concept of a 'focused view' and keyboard shortcuts for zoom in/out (ctrl or cmd+up/down) and side to side scroll (ctrl or cmd +left/right)

• make bookmark persistent in localstorage so that they are usable across different sessions

• upgrades jbrowse-web and jbrowse-desktop to use React 18 and latest versions of mobx+mobx-react+mobx-state-tree, and enable React.StrictMode

Note: embedded users can also opt-into React 18 for their apps, see lgv storybook for details

See the full changelog below for details!

🚀 Enhancement

• Other
  • #3956 Make faceted track selector facet filters responsive to adjacent filter selections (@cmdcolin)
  • #3953 Report JSON parse error when failing to load JSON file on desktop (@cmdcolin)
  • #3951 Add jobs widget to jbrowse-web (@carolinebridge-oicr)
  • #3900 Make bookmarks persistent across sessions with local storage (@carolinebridge-oicr)
  • #3896 Upgrade oclif to v3 to avoid deprecation warnings (@garrettjstevens)
  • #3907 Change the config.json missing screen to an "It worked!" message (@cmdcolin)
  • #3901 Use shortened VCF feature description for some types of insertions and deletions (@cmdcolin)
  • #3840 Adds custom filtering option to alignments tracks (@carolinebridge-oicr)
  • #3832 Adds keyboard shortcuts for panning and zooming on a focused view (@carolinebridge-oicr)
• core
  • #3954 Add column resizing for jbrowse-desktop start screen recent sessions panel (@cmdcolin)
  • #3938 Adds code improvements to GridBookmarkWidget (@carolinebridge-oicr)
  • #3914 Swap out NPM color library for colord library (@cmdcolin)
• app-core, core, embedded-core
  • #3931 Add eslint-plugin-fast-refresh (@cmdcolin)
• app-core
  • #3916 Use theme.secondary.main instead of theme.secondary.light on focusedView (@cmdcolin)
• app-core, core, embedded-core, product-core, text-indexing, web-core
  • #3502 Update to react v18, mobx-react v9 (@cmdcolin)
  • #3885 Eject react-script config from jbrowse-web and jbrowse-desktop (@cmdcolin)
• app-core, core, web-core
  • #3831 Adds session model reference to view in focus (@carolinebridge-oicr)

🐛 Bug Fix

• app-core, core
  • #3959 Remove type any from return value of getContainingView, getSession (@cmdcolin)
• Other
  • #3946 Fix setting multiple hierarchical defaultCollapsed config options at initialization (@cmdcolin)
  • #3937 Fix dev mode error from LGV overview scalebar (@cmdcolin)
  • #3925 Reduce amount of canvas commands issued to the dotplot renderer (@cmdcolin)
  • #3924 Fix incorrect tick mark label on dotplot axes happening in some cases (@cmdcolin)
  • #3921 Fix hydration warning by only rendering the SvgFeature "selected feature" and "mouseover" client side (@cmdcolin)
  • #3910 Fix feature label offsets in SVG exports with main thread RPC (@cmdcolin)
  • #3905 Fix alignments track infinite loading when applying same "Color by" or "Sort by" setting twice (@cmdcolin)
  • #3904 Fix "Color by"->"Mapping quality" for CRAM files (@cmdcolin)
  • #3902 Fix ability to use plaintext bed in add-track CLI (@cmdcolin)
• core
  • #3929 Fix mouse getting out of sync while dragging resize handle (@cmdcolin)
  • #3912 Avoid undefined getConf on assembly.configuration safeReference (@cmdcolin)
  • #3887 Add forwardRef to wrapped re-exported lazy components (@garrettjstevens)
  • #3866 Fix calculation of width of "view container title" (@cmdcolin)
  • #3865 Strip alpha from colors for improved SVG export compatibility (@cmdcolin)

📝 Documentation

• #3957 Add error handler example for embedded components (@cmdcolin)
• #3913 Add color scheme for pathogenicity for ClinVar config_demo track (@scottcain)
• #3881 Improve some of the extension point documentation (@cmdcolin)

🏠 Internal

• app-core, core, embedded-core
  • #3931 Add eslint-plugin-fast-refresh (@cmdcolin)
• core
  • #3920 Remove some unused "renameReference" code in static/dynamic blocks (@cmdcolin)
• Other
  • #3882 Minor refactors and typescripting improvements (@cmdcolin)
• app-core, core, embedded-core, product-core, web-core
  • #3855 Replace shortid with vendored nanoid (@cmdcolin)

Committers: 4

• Caroline Bridge (@carolinebridge-oicr)
• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens)
• Scott Cain (@scottcain) Done in 2.80s.

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This discussion was created from the release Release v2.7.0.