plugins.json

{
  "plugins": [
    {
      "name": "MsaView",
      "authors": ["Colin Diesh"],
      "description": "multiple sequence alignment browser plugin for JBrowse 2",
      "location": "https://github.com/GMOD/jbrowse-plugin-msaview",
      "url": "https://unpkg.com/jbrowse-plugin-msaview/dist/jbrowse-plugin-msaview.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/msaview-screenshot-fs8.png"
    },
    {
      "name": "GDC",
      "authors": [
        "Garrett Stevens",
        "Colin Diesh",
        "Rob Buels",
        "Caroline Bridge"
      ],
      "description": "JBrowse 2 plugin for integrating with GDC resources",
      "location": "https://github.com/GMOD/jbrowse-plugin-gdc",
      "url": "https://unpkg.com/jbrowse-plugin-gdc/dist/jbrowse-plugin-gdc.umd.production.min.js",
      "license": "MIT",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/gdc-screenshot-fs8.png"
    },
    {
      "name": "Quantseq",
      "authors": ["Elliot Hershberg"],
      "description": "External JB2 plugin implementing a QuantitativeSequence track for displaying base-resolution models.",
      "location": "https://github.com/GMOD/jbrowse-plugin-quantseq",
      "url": "https://unpkg.com/jbrowse-plugin-quantseq/dist/jbrowse-plugin-quantseq.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/quantseq-screenshot-fs8.png"
    },
    {
      "name": "GWAS",
      "authors": ["Colin Diesh"],
      "description": "Plugin for displaying GWAS results such as manhattan plot renderings",
      "location": "https://github.com/cmdcolin/jbrowse-plugin-gwas",
      "url": "https://unpkg.com/jbrowse-plugin-gwas/dist/jbrowse-plugin-gwas.umd.production.min.js",
      "license": "MIT",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/gwas-screenshot-fs8.png"
    },
    {
      "name": "UCSC",
      "authors": ["Colin Diesh"],
      "description": "A JBrowse 2 plugin for accessing the UCSC API",
      "location": "https://github.com/cmdcolin/jbrowse-plugin-ucsc-api",
      "url": "https://unpkg.com/jbrowse-plugin-ucsc/dist/jbrowse-plugin-ucsc.umd.production.min.js",
      "license": "MIT",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/ucsc-screenshot-fs8.png"
    },
    {
      "name": "Biothings",
      "authors": ["Colin Diesh"],
      "description": "Adapts to APIs like mygene.info to get super rich gene annotations",
      "location": "https://github.com/cmdcolin/jbrowse-plugin-biothings-api",
      "url": "https://unpkg.com/jbrowse-plugin-biothings/dist/jbrowse-plugin-biothings.umd.production.min.js",
      "license": "MIT",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/biothings-screenshot-fs8.png"
    },
    {
      "name": "Ideogram",
      "authors": ["Colin Diesh", "Caroline Bridge"],
      "description": "JBrowse 2 plugin for rendering ideograms",
      "location": "https://github.com/cmdcolin/jbrowse-plugin-ideogram",
      "url": "https://unpkg.com/jbrowse-plugin-ideogram/dist/jbrowse-plugin-ideogram.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/ideogram-screenshot-fs8.png"
    },
    {
      "name": "CIVIC",
      "authors": ["Colin Diesh"],
      "description": "JBrowse 2 plugin for fetching data from the CIVIC clinical interpretation of cancer variants",
      "location": "https://github.com/cmdcolin/jbrowse-plugin-civic-api",
      "url": "https://unpkg.com/jbrowse-plugin-civic/dist/jbrowseplugincivic.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/civic-screenshot-fs8.png"
    },
    {
      "name": "ICGC",
      "authors": ["Caroline Bridge"],
      "description": "JBrowse 2 plugin to integrate resources from the ICGC",
      "location": "https://github.com/GMOD/jbrowse-plugin-icgc",
      "url": "https://unpkg.com/jbrowse-plugin-icgc/dist/jbrowse-plugin-icgc.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/icgc-screenshot-fs8.png"
    },
    {
      "name": "Reactome",
      "authors": ["Caroline Bridge"],
      "description": "JBrowse 2 plugin to integrate resources from Reactome",
      "location": "https://github.com/GMOD/jbrowse-plugin-reactome",
      "url": "https://unpkg.com/jbrowse-plugin-reactome/dist/jbrowse-plugin-reactome.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/reactome-screenshot-fs8.png"
    },
    {
      "name": "MultilevelLinearView",
      "authors": ["Caroline Bridge"],
      "description": "JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levels",
      "location": "https://github.com/GMOD/jbrowse-plugin-multilevel-linear-view",
      "url": "https://unpkg.com/jbrowse-plugin-multilevel-linear-view2/dist/jbrowse-plugin-multilevel-linear-view2.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/mllv-screenshot-fs8.png"
    },
    {
      "name": "TrackHubRegistry",
      "authors": ["Colin Diesh"],
      "description": "JBrowse 2 plugin that adds ability to connect to hubs from the trackhub registry. Note: only for use with v2.3.0 or greater",
      "location": "https://github.com/cmdcolin/jbrowse-plugin-trackhub-registry",
      "url": "https://unpkg.com/jbrowse-plugin-trackhub-registry/dist/jbrowse-plugin-trackhub-registry.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/trackhub-fs8.png"
    },
    {
      "name": "RefGet",
      "authors": ["Emilio Righi"],
      "description": "JBrowse 2 plugin that adds ability to retrieve sequences from refget API compliant servers",
      "location": "https://github.com/emiliorighi/jbrowse-plugin-refget-api",
      "url": "https://unpkg.com/jbrowse-plugin-refget-api/dist/jbrowse-plugin-refget-api.umd.production.min.js",
      "license": "ISC"
    },
    {
      "name": "Linkout",
      "authors": ["NAL-i5K"],
      "description": "JBrowse 2 plugin that links out to feature page based on dbxref",
      "location": "https://github.com/NAL-i5K/jbrowse-plugin-linkout",
      "url": "https://unpkg.com/jbrowse-plugin-linkout/dist/jbrowse-plugin-linkout.umd.production.min.js",
      "license": "Apache License 2.0",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/linkout-screenshot-fs8.png"
    },
    {
      "name": "MafViewer",
      "authors": ["Colin Diesh"],
      "description": "View multiple alignment format (MAF) files as tracks",
      "location": "https://github.com/cmdcolin/jbrowse-plugin-mafviewer",
      "license": "MIT",
      "url": "https://unpkg.com/jbrowse-plugin-mafviewer/dist/jbrowse-plugin-mafviewer.umd.production.min.js",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/mafviewer.png"
    },
    {
      "name": "Protein3d",
      "authors": ["Colin Diesh"],
      "description": "View 3-D protein structures in JBrowse 2",
      "location": "https://github.com/cmdcolin/jbrowse-plugin-protein3d",
      "license": "MIT",
      "url": "https://unpkg.com/jbrowse-plugin-protein3d/dist/jbrowse-plugin-protein3d.umd.production.min.js",
      "image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/protein3d-fs8.png"
    }
  ]
}