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I am working with a GFF file that contains multiple contigs, but the ##sequence-region only shows for the contig 1 in the gff header info.
Currently, while using .get_seqid2size() from gff parser, present code relies on ##sequence-region tag, therefore it gets the range for rest of the contigs wrong.
It could be solved by not relying on the ##sequence-region, since many gff file generated by different programs may not contain this comment.
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I am working with a GFF file that contains multiple contigs, but the
##sequence-region
only shows for the contig 1 in the gff header info.Currently, while using
.get_seqid2size()
from gff parser, present code relies on##sequence-region
tag, therefore it gets the range for rest of the contigs wrong.It could be solved by not relying on the
##sequence-region
, since many gff file generated by different programs may not contain this comment.Also, do you take pull request?
Thank you for the excellent package.
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