Merge pull request #49 from GMOD/automate_namefixes

Automate namefixes
GMOD · Jul 19, 2024 · 4470d6c · 4470d6c
2 parents e5ca026 + 9d7d12d
commit 4470d6c
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Showing 136 changed files with 271 additions and 24,663 deletions.
diff --git a/wiki/AGS2011.md b/wiki/AGS2011.md
@@ -14,7 +14,7 @@
 
 
 (Redirected from
-[AGS2011](http://gmod.org/mediawiki/index.php?title=AGS2011&redirect=no "AGS2011"))
+[AGS2011](AGS2011)
 
 
 

diff --git a/wiki/Apollo_Tutorial.md b/wiki/Apollo_Tutorial.md
@@ -14,7 +14,7 @@
 
 
 (Redirected from [Apollo
-Tutorial](http://gmod.org/mediawiki/index.php?title=Apollo_Tutorial&redirect=no "Apollo Tutorial"))
+Tutorial](Apollo_Tutorial)
 
 
 

diff --git a/wiki/Artemis_Tutorial.md b/wiki/Artemis_Tutorial.md
@@ -14,7 +14,7 @@
 
 
 (Redirected from [Artemis
-Tutorial](http://gmod.org/mediawiki/index.php?title=Artemis_Tutorial&redirect=no "Artemis Tutorial"))
+Tutorial](Artemis_Tutorial)
 
 
 

diff --git a/wiki/BioMart_Tutorial_2011.md b/wiki/BioMart_Tutorial_2011.md
@@ -14,7 +14,7 @@
 
 
 (Redirected from [BioMart Tutorial
-2011](http://gmod.org/mediawiki/index.php?title=BioMart_Tutorial_2011&redirect=no "BioMart Tutorial 2011"))
+2011](BioMart_Tutorial_2011)
 
 
 

diff --git a/wiki/Box.md b/wiki/Box.md
@@ -14,7 +14,7 @@
 
 
 (Redirected from
-[Box](http://gmod.org/mediawiki/index.php?title=Box&redirect=no "Box"))
+[Box](Box)
 
 
 

diff --git a/wiki/BrowseDev/Using_a_Database_With_JBrowse.md b/wiki/BrowseDev/Using_a_Database_With_JBrowse.md
@@ -2,21 +2,16 @@
 
 
 
-<span id="top"></span>
 
 
 
 
-# <span dir="auto">JBrowse Configuration Guide</span>
+# JBrowse Configuration Guide
 
 
 
 
 
-(Redirected from [BrowseDev/Using a Database With
-JBrowse](http://gmod.org/mediawiki/index.php?title=BrowseDev/Using_a_Database_With_JBrowse&redirect=no "BrowseDev/Using a Database With JBrowse"))
-
-
 
 
 
@@ -41,12 +36,9 @@ want to do with your JBrowse.
 
 Check out the new [JBrowse FAQ](../JBrowse_FAQ "JBrowse FAQ") page for
 more tips on setup and configuration
-<a href="../JBrowse_FAQ" class="external free"
-rel="nofollow">http://gmod.org/wiki/JBrowse_FAQ</a>
 
 Also see the [JBrowse Desktop](../JBrowse_Desktop "JBrowse Desktop")
-guide here <a href="../JBrowse_Desktop" class="external free"
-rel="nofollow">http://gmod.org/wiki/JBrowse_Desktop</a>
+guide here 
 
 
 
@@ -1447,7 +1439,7 @@ make it higher resolution
 
 
 Retrieved from
-"[http://gmod.org/mediawiki/index.php?title=JBrowse_Configuration_Guide&oldid=27898#Using_JBrowse_with_Existing_Databases](http://gmod.org/mediawiki/index.php?title=JBrowse_Configuration_Guide&oldid=27898#Using_JBrowse_with_Existing_Databases#Using_JBrowse_with_Existing_Databases)"
+"[http://gmod.org/mediawiki/index.php?title=JBrowse_Configuration_Guide&oldid=27898#Using_JBrowse_with_Existing_Databases](JBrowse_Configuration_Guide"
 
 
 

diff --git a/wiki/CVS.md b/wiki/CVS.md
@@ -14,7 +14,7 @@
 
 
 (Redirected from
-[CVS](http://gmod.org/mediawiki/index.php?title=CVS&redirect=no "CVS"))
+[CVS](CVS)
 
 
 

diff --git a/wiki/Category%3A!FixAfterUpgrade.md b/wiki/Category%3A!FixAfterUpgrade.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/!FixAfterUpgrade "Special%253ASearch/!FixAfterUpgrade")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253A!FixAfterUpgrade"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3A2013_Summer_School.md b/wiki/Category%3A2013_Summer_School.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/2013_Summer_School "Special:Search/2013 Summer School")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253A2013_Summer_School"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3ABioDIG.md b/wiki/Category%3ABioDIG.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](http://gmod.org/wiki/Special:Search/BioDIG "Special:Search/BioDIG")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253ABioDIG"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3ACanto.md b/wiki/Category%3ACanto.md
@@ -21,10 +21,7 @@
 
 There is currently no text in this page. You can [search for this page
 title](http://gmod.org/wiki/Special:Search/Canto "Special:Search/Canto")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253ACanto"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+in other pages
 
 
 

diff --git a/wiki/Category%3ACloud.md b/wiki/Category%3ACloud.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](http://gmod.org/wiki/Special:Search/Cloud "Special:Search/Cloud")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253ACloud"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3ADatabase.md b/wiki/Category%3ADatabase.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/Database "Special%253ASearch/Database") in other
-pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253ADatabase"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3ADeprecated.md b/wiki/Category%3ADeprecated.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/Deprecated "Special%253ASearch/Deprecated") in other
-pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253ADeprecated"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3AFile_Formats.md b/wiki/Category%3AFile_Formats.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/File_Formats "Special:Search/File Formats") in
-other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253AFile_Formats"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3AGFF.md b/wiki/Category%3AGFF.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](http://gmod.org/wiki/Special:Search/GFF "Special:Search/GFF") in
-other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253AGFF"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3AGFF3.md b/wiki/Category%3AGFF3.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](http://gmod.org/wiki/Special:Search/GFF3 "Special:Search/GFF3")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253AGFF3"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3AGMOD_Online_Training.md b/wiki/Category%3AGMOD_Online_Training.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/GMOD_Online_Training "Special:Search/GMOD Online Training")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253AGMOD_Online_Training"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3AGeneric_Gene_Pages.md b/wiki/Category%3AGeneric_Gene_Pages.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/Generic_Gene_Pages "Special:Search/Generic Gene Pages")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253AGeneric_Gene_Pages"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3AInstall.md b/wiki/Category%3AInstall.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/Install "Special%253ASearch/Install") in other pages,
-or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253AInstall"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3AJobs.md b/wiki/Category%3AJobs.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/Jobs "Special%253ASearch/Jobs") in other pages, or
-<span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253AJobs"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3ANGS.md b/wiki/Category%3ANGS.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](http://gmod.org/wiki/Special:Search/NGS "Special:Search/NGS") in
-other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253ANGS"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3ANews_Items.md b/wiki/Category%3ANews_Items.md
@@ -32,7 +32,7 @@ Item](GMOD_News#Adding_a_News_Item "GMOD News") for details.
 The following 200 pages are in this category, out of 332 total.
 
 (previous 200) ([next
-200](http://gmod.org/mediawiki/index.php?title=Category%253ANews_Items&pagefrom=News%2FJBrowse+1.10.0+released#mw-pages#mw-pages "Category%253ANews Items"))
+200](Category%253ANews_Items)
 
 
 
@@ -589,7 +589,7 @@ title="News/JBrowse 1.1 Released">News/JBrowse 1.1 Released</a></li>
 
 
 (previous 200) ([next
-200](http://gmod.org/mediawiki/index.php?title=Category%253ANews_Items&pagefrom=News%2FJBrowse+1.10.0+released#mw-pages#mw-pages "Category%253ANews Items"))
+200](Category%253ANews_Items)
 
 
 

diff --git a/wiki/Category%3APages_containing_blacklisted_links.md b/wiki/Category%3APages_containing_blacklisted_links.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/Pages_containing_blacklisted_links "Special:Search/Pages containing blacklisted links")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253APages_containing_blacklisted_links"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3APages_with_broken_file_links.md b/wiki/Category%3APages_with_broken_file_links.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/Pages_with_broken_file_links "Special:Search/Pages with broken file links")
-in other pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253APages_with_broken_file_links"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3APerformance.md b/wiki/Category%3APerformance.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/Performance "Special%253ASearch/Performance") in other
-pages, or <span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253APerformance"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3AREST.md b/wiki/Category%3AREST.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/REST "Special%253ASearch/REST") in other pages, or
-<span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253AREST"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
 
 
 

diff --git a/wiki/Category%3ARPC.md b/wiki/Category%3ARPC.md
@@ -19,12 +19,7 @@
 
 
 
-There is currently no text in this page. You can [search for this page
-title](Special%253ASearch/RPC "Special%253ASearch/RPC") in other pages, or
-<span class="plainlinks"><a
-href="http://gmod.org/mediawiki/index.php?title=Special:Log&amp;page=Category%253ARPC"
-class="external text" rel="nofollow">search the related logs</a></span>,
-but you do not have permission to create this page.
+
Original file line number	Diff line number	Diff line change
Expand Up		@@ -14,7 +14,7 @@


		(Redirected from
		[AGS2011](http://gmod.org/mediawiki/index.php?title=AGS2011&redirect=no "AGS2011"))
		[AGS2011](AGS2011)



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Original file line number	Diff line number	Diff line change
Expand Up		@@ -14,7 +14,7 @@


		(Redirected from [Apollo
		Tutorial](http://gmod.org/mediawiki/index.php?title=Apollo_Tutorial&redirect=no "Apollo Tutorial"))
		Tutorial](Apollo_Tutorial)



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Original file line number	Diff line number	Diff line change
Expand Up		@@ -14,7 +14,7 @@


		(Redirected from [Artemis
		Tutorial](http://gmod.org/mediawiki/index.php?title=Artemis_Tutorial&redirect=no "Artemis Tutorial"))
		Tutorial](Artemis_Tutorial)



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Original file line number	Diff line number	Diff line change
Expand Up		@@ -14,7 +14,7 @@


		(Redirected from [BioMart Tutorial
		2011](http://gmod.org/mediawiki/index.php?title=BioMart_Tutorial_2011&redirect=no "BioMart Tutorial 2011"))
		2011](BioMart_Tutorial_2011)



Expand Down