CAR T therapy patient response modeling using scRNA omics data analysis

In this repo we are modeling Single Cell RNA CAR T therapy response using scanpy tools, random forests and also use CNN (pytorch required).

Files:

• Basic Visualization of dataset, Clustering and Response modeling using Random Forest Classifier
• Response modeling using convolution neural network
• Integrating scGPT cell embeddings for response modeling and gene interaction

Libraries used:

• scanpy 1.10.3
• python 3.10
• pandas
• numpy
• pytorch 2.1.2
• cuda 12.1
• scGPT