Program that calculates the feasibility of a reaction network to being an organization.
The program consists of a main function, which receives as input the path of an sbml file. And it returns a list type file with information from the reaction network.
rn.proc(f=rn.name,tot_org=T)
rn.name path of .sbml file of the reaction network
tot_org Boolean that submitted the calculation of the feasibility of being an organization
List element components:
$sp.id character vector from the sbml file component id
$sp.idn character vector from the sbml file component idn
$sp.name character vector from the sbml file component name
$reac list of all reaction extracted form the *.sbml file with their respective reactive and product stoichiometry and components involved.
$mp productive part of the stoichiometric matrix
$mr reactive part of the stoichiometric matrix
$nsp components required to become an organization.
A list of sbml files proposed as organizational reaction networks can be found in the sbml folder. These networks represent the Gaia atmospheric system under different inflow scenarios.