Fixes involving CRAM and header API for long references.#976

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jkbonfield wants to merge 3 commits intosamtools:developfrom jkbonfield:long_cigar2

+134-107

Commits on Nov 15, 2019

Commits on Nov 18, 2019

Create/update long reference length dictionary (sdict) together with target_name and target_len.
valeriuo
committed